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Full Notes
Gut Anatomy and Blood Supply
- The gut is divided into three parts: foregut, midgut, and hindgut
- Foregut: first part of the small intestine, lungs, pharynx, pancreas, gallbladder
- Midgut: majority of the small intestine, first part of the large intestine
- Hindgut: end of the large intestine
- Blood supply to the gut comes from three vessels off the aorta: celiac artery, superior mesenteric artery, and inferior mesenteric artery
- Celiac artery supplies the foregut
- Superior mesenteric artery supplies the midgut
- Inferior mesenteric artery supplies the hindgut
- The liver receives blood from the gut through a portal system, allowing it to process nutrients absorbed by the gut
Gut Nervous System
- The gut has its own intrinsic nervous system, called the enteric nervous system or “second brain”
- Can function independently of the central nervous system (CNS)
- Present in all vertebrates, with complexity increasing as vertebrates become more complex
- Two major parts of the enteric nervous system: submucosal plexus and myenteric plexus
- Submucosal plexus: located in the dense layer of connective tissue beneath the mucosa
- Myenteric plexus: located between the two layers of smooth muscle (circular and longitudinal) on the outside of the gut
- The enteric nervous system communicates with the CNS, with the brain acting like a CEO giving general commands while the gut controls the details of its behavior
Gut Layers and Epithelial Turnover
- From the inside out, the layers of the gut are:
- Mucosa: lining of the gut, including the epithelium and a loose nervous system called the lamina propria
- Submucosa: dense layer of connective tissue
- Circular layer of smooth muscle
- Longitudinal layer of smooth muscle
- Thin epithelial layer if in the peritoneal cavity
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Epithelial cells in the gut have a turnover rate of about once a week, with variation depending on the type of cell
Gut Innervation and Pain - Gut experiences pain primarily in response to dilation or pressure
- Cutting inside the gut does not cause pain
- Pain fibers located in dorsal root ganglia, relay signal to the brain via spinal cord
- Vagus nerve carries some pain information, but mostly homeostasis signals
- CNS can affect gut function, e.g., anxiety-induced diarrhea or travel-induced constipation
- Sympathetic nerves can slow gut function in response to fright
CNS Communication with the Gut
- CNS communicates with the gut via sympathetic and parasympathetic nerves
- Acetylcholine involved in communication
- Gut receives message from CNS and responds accordingly, e.g., rapid peristalsis and less absorption in anxiety-induced diarrhea
- Enteric nervous system functions in response to CNS input
- Command neurons in the gut receive input from CNS and start reflexes
- Intrinsic nerve cells in the gut outnumber extrinsic nerve cells by three orders of magnitude
- Gut has various behaviors, not just constant propulsion
Gut Function and Appetite Regulation
- Gut has various behaviors: propelling, mixing, and cleaning
- Mixing allows enzymes to digest food effectively
- Cleaning process occurs during sleep, clearing out larger particles
Appetite Regulation
- Mechanical and chemical factors affect appetite
- Distension of the stomach and rise of blood glucose levels contribute to satiety
- Gut hormones like cholesystechinan and leptin signal to the brain to regulate appetite
- Ghrelin is a gut hormone that promotes appetite, secreted at a constant rate and can be upregulated or downregulated
Gastric Bypass Surgery
- Reroutes the upper GI tract, triggering satiety signals sooner
- Can be effective for treating obesity and type 2 diabetes
- High-calorie liquids can still be consumed, bypassing the surgery’s effects
Neurodegenerative Diseases and the Gut
- Connection between CNS diseases and the gut has been studied for around 30 years
- Varicella Zoster virus (chickenpox and shingles) can infect the gut, causing serious complications
- The virus remains latent in the body after chickenpox and can reactivate as shingles later in life
Chickenpox and Varicella Zoster Virus - Chickenpox virus remains latent in nerve cells for life
- Reactivation causes shingles, a painful rash
- 15% of people develop postherpetic neuralgia (PHN), persistent pain for years
- Immune system can’t eradicate the virus when it’s in nerve cells
- Virus is sequestered and not expressed on the surface of nerve cells
Autism and Gastrointestinal Issues
- Autism severity correlates with increased prevalence of gastrointestinal issues
- Constipation, diarrhea, food sensitivities, and allergies
- Autism likely involves synaptic transmission in the central nervous system (CNS) and enteric nervous system
- No regularity to symptoms, difficult to document rigorously
- Andrew Wakefield’s discredited theory:
- Measles, mumps, and rubella vaccine caused gut defects
- Gluten consumption led to absorption of opiate-like substances, causing autism
- This theory has been debunked and discredited
Serotonin and Autism
- Serotonin levels are higher in a subset of kids with Autism Spectrum Disorder (ASD)
- Serotonin is a neurotransmitter and endocrine substance in the gut
- 95% of the body’s serotonin is made in the gut, while the brain produces about 2–3%
- Serotonin is important in feeling pain in the gut, triggering nausea, and as a growth factor during development
SSRIs and the Gut
- SSRIs (Selective Serotonin Reuptake Inhibitors) are used to treat depression and anxiety
- SSRIs can cause nausea and change gut motility
- SSRIs given during pregnancy can lead to an abnormal nervous system in the offspring
- There is evidence that conditions like irritable bowel syndrome are increased in offspring of mothers treated with SSRIs during pregnancy
Leaky Gut
- Tight junctions are connections between epithelial cells that prevent material from passing through the channel between two cells
- Leaky gut occurs when tight junctions are compromised, allowing material from the lumen to enter the body and vice versa
- The most common cause of leaky gut is allergy, where the immune system reacts and causes tight junctions to open
- If the gut lining is wounded, adjacent cells can crawl over the space and cut it off
Gut Health Assessment
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If someone has a substantially leaky gut, it can be detected by determining the serum protein albumin; if the gut is leaking, albumin will be low
Leaky Gut and Autism Spectrum Disorder - Leaky gut is a controversial topic
- Some believe it allows toxins and microorganisms to enter the body
- No clear evidence that leaky gut is related to autism spectrum disorder (ASD)
- ASD is a disorder of the nervous system
- Gut problems in ASD are related to serotonin and the ability of serotonin to act as a growth factor
- Deficiency in numbers of neuro cells in the bowel
Bacteria in the Gut
- Bacteria in the gut are mostly anaerobes (live in the absence of oxygen)
- Hard to culture, making them difficult to study
- Bacteria in the colon:
- Produce short-chain fatty acids, which are absorbed by the lining of the colon
- Make certain vitamins, like vitamin K
- Regulate mood and obesity
- Bacteria in the gut can interact with the nervous system
- Activate lining epithelial cells to release serotonin or other chemicals
- Signal through the vagus nerves to the brain
- Chemical products from bacteria can trigger nerve signals or affect the brain through the blood-brain barrier
Germ-Free Mice
- Germ-free (notobiotic) mice are bred without any contact with organisms
- Allows for studying the effects of bacteria on the gut and nervous system
Germ-Free Animals and Gut Microbiome
- Allows for studying the effects of bacteria on the gut and nervous system
- Germ-free animals are born via Caesarean section, fed sterile food, and live in incubators
- After one year, germ-free animals have more primitive gut systems, fewer nerve cells, and almost no immune system
- Bacteria in the gut can determine obesity or lack thereof in mice
- Fecal transplants from lean to obese individuals have been done, but not under controlled settings
- Antibiotics can have a major effect on the human microbiome, altering gut bacteria
Fecal Transplants and Risks
- Fecal transplants are used to treat C. difficile infections
- Procedure involves transferring fecal matter from a healthy donor to the patient’s gut
- Risks include potential transfer of harmful bacteria or organisms
- Synthetic biology could potentially create microorganisms for controlled transplants, but currently limited by the inability to grow and maintain these organisms in vitro
Commercial Home Kits for Gut Microbiome Analysis
- Home kits provide information on the classes of organisms and their proportions in the gut
- Current resolution is too low to provide actionable information
- Cologuard is a more accurate test that looks for genetic signatures of GI cancers in stool samples
Probiotics and the Gastrointestinal System - Probiotics are live bacteria that provide health benefits when consumed
- The FTC regulates claims made for probiotic products
- Companies must demonstrate evidence that their product does what they claim
- Probiotics can help restore the GI system after antibiotics
- Lactobacillus and Saccharomyces are examples of probiotics that colonize the GI tract
- Probiotics do not necessarily need to be refrigerated
- Depends on the specific probiotic and its formulation
- Bioengineering could potentially improve the growth and effectiveness of probiotics in the future
The Human Gastrointestinal System
- Unique embryology and innervation
- Cohabitation with bacteria that outnumber human cells
- Still considered a “black box” in terms of understanding and research
- Ongoing research and advancements in understanding the GI system and its interactions with bacteria and probiotics
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